IL_9Y49_062

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y49_062 not in the Motif Atlas

Homologous match to IL_8GLP_059

Geometric discrepancy: 0.2044

The information below is about IL_8GLP_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15190.4

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

9Y49|1|A5|C|1551
9Y49|1|A5|G|1552
9Y49|1|A5|A|1553
9Y49|1|A5|A|1554
9Y49|1|A5|G|1555
*
9Y49|1|A5|U|1572
9Y49|1|A5|G|1573
9Y49|1|A5|G|1574
9Y49|1|A5|A|1575
9Y49|1|A5|G|1576

Current chains

Chain A5

LSU-alpha rRNA (1722-MER)

Nearby chains

Chain A6

Large subunit ribosomal RNA; LSU rRNA

Chain CA

60S ribosomal protein L8

Chain CR

Large ribosomal subunit protein eL19

Chain Cp

60S ribosomal protein L37a