IL_9Y49_081

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGC*GG

Length

5 nucleotides

Bulged bases

9Y49|1|A5|G|1919

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y49_081 not in the Motif Atlas

Homologous match to IL_8GLP_077

Geometric discrepancy: 0.1581

The information below is about IL_8GLP_077

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

77

Unit IDs

9Y49|1|A5|U|1918
9Y49|1|A5|G|1919
9Y49|1|A5|C|1920
*
9Y49|1|A5|G|2063
9Y49|1|A5|G|2064

Current chains

Chain A5

LSU-alpha rRNA (1722-MER)

Nearby chains

Chain CF

60S ribosomal protein L7

Chain CO

60S ribosomal protein L13a

Chain CS

60S ribosomal protein L18a

Chain Cf

60S ribosomal protein L35a