IL_9Y49_083
3D structure
- PDB id
- 9Y49 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CUCAUCAG*CUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 9Y49|1|A5|U|1930, 9Y49|1|A5|C|1931, 9Y49|1|A5|G|2055, 9Y49|1|A5|A|2057
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Y49_083 not in the Motif Atlas
- Homologous match to IL_9H3G_057
- Geometric discrepancy: 0.1493
- The information below is about IL_9H3G_057
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_39054.3
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
9Y49|1|A5|C|1926
9Y49|1|A5|U|1927
9Y49|1|A5|C|1928
9Y49|1|A5|A|1929
9Y49|1|A5|U|1930
9Y49|1|A5|C|1931
9Y49|1|A5|A|1932
9Y49|1|A5|G|1933
*
9Y49|1|A5|C|2053
9Y49|1|A5|U|2054
9Y49|1|A5|G|2055
9Y49|1|A5|G|2056
9Y49|1|A5|A|2057
9Y49|1|A5|G|2058
Current chains
- Chain A5
- LSU-alpha rRNA (1722-MER)
Nearby chains
- Chain A6
- Large subunit ribosomal RNA; LSU rRNA
- Chain CH
- 60S ribosomal protein L9
- Chain CO
- 60S ribosomal protein L13a
- Chain CS
- 60S ribosomal protein L18a
- Chain Cm
- 60S ribosomal protein L40
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