IL_9Y49_089

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCG*CG

Length

5 nucleotides

Bulged bases

9Y49|1|A5|C|2084

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y49_089 not in the Motif Atlas

Geometric match to IL_8GLP_024

Geometric discrepancy: 0.2561

The information below is about IL_8GLP_024

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

9Y49|1|A5|C|2083
9Y49|1|A5|C|2084
9Y49|1|A5|G|2085
*
9Y49|1|A6|C|2272
9Y49|1|A6|G|2273

Current chains

Chain A5

LSU-alpha rRNA (1722-MER)

Chain A6

LSU-beta rRNA (2069-MER)

Nearby chains

Chain CC

60S ribosomal protein L4

Chain CF

60S ribosomal protein L7

Chain CQ

60S ribosomal protein L18

Chain Ce

60S ribosomal protein L32