IL_9Y49_095

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAAC*GAA

Length

8 nucleotides

Bulged bases

9Y49|1|A6|A|2428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y49_095 not in the Motif Atlas

Homologous match to IL_8GLP_301

Geometric discrepancy: 0.1782

The information below is about IL_8GLP_301

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06671.3

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

9Y49|1|A6|U|2415
9Y49|1|A6|G|2416
9Y49|1|A6|A|2417
9Y49|1|A6|A|2418
9Y49|1|A6|C|2419
*
9Y49|1|A6|G|2427
9Y49|1|A6|A|2428
9Y49|1|A6|A|2429

Current chains

Chain A6

LSU-beta rRNA (2069-MER)

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain CP

60S ribosomal protein L17

Chain CR

Large ribosomal subunit protein eL19

Chain Cl

60S ribosomal protein L39