IL_9Y49_099

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GG*UCUC

Length

6 nucleotides

Bulged bases

9Y49|1|A6|C|2768

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y49_099 not in the Motif Atlas

Geometric match to IL_9AXU_034

Geometric discrepancy: 0.2262

The information below is about IL_9AXU_034

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

9Y49|1|A6|G|2549
9Y49|1|A6|G|2550
*
9Y49|1|A6|U|2767
9Y49|1|A6|C|2768
9Y49|1|A6|U|2769
9Y49|1|A6|C|2770

Current chains

Chain A6

LSU-beta rRNA (2069-MER)

Nearby chains

Chain Cg

60S ribosomal protein L34

Chain Ck

60S ribosomal protein L38