IL_9Y49_125

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y49_125 not in the Motif Atlas

Geometric match to IL_8OI5_091

Geometric discrepancy: 0.1149

The information below is about IL_8OI5_091

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24886.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

13

Unit IDs

9Y49|1|A6|G|3780
9Y49|1|A6|C|3781
*
9Y49|1|A6|G|3811
9Y49|1|A6|C|3812
9Y49|1|A6|A|3813
9Y49|1|A6|U|3814

Current chains

Chain A6

LSU-beta rRNA (2069-MER)

Nearby chains

Chain Cn

60S ribosomal protein L41