IL_9Y49_129

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

9Y49|1|A6|U|3914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y49_129 not in the Motif Atlas

Homologous match to IL_8GLP_130

Geometric discrepancy: 0.1472

The information below is about IL_8GLP_130

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

173

Unit IDs

9Y49|1|A6|G|3913
9Y49|1|A6|U|3914
9Y49|1|A6|U|3915
*
9Y49|1|A6|A|4388
9Y49|1|A6|C|4389

Current chains

Chain A6

LSU-beta rRNA (2069-MER)

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain CC

60S ribosomal protein L4

Chain Ca

60S ribosomal protein L27a