IL_9Y49_163

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCG*CU

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y49_163 not in the Motif Atlas

Geometric match to IL_8GLP_054

Geometric discrepancy: 0.31

The information below is about IL_8GLP_054

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

9Y49|1|A6|G|4740
9Y49|1|A6|C|4741
9Y49|1|A6|G|4742
*
9Y49|1|A6|C|4958
9Y49|1|A6|U|4959

Current chains

Chain A6

LSU-beta rRNA (2069-MER)

Nearby chains