IL_9Y49_204

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGA*UAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y49_204 not in the Motif Atlas

Homologous match to IL_9PN5_162

Geometric discrepancy: 0.1621

The information below is about IL_9PN5_162

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.4

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

62

Unit IDs

9Y49|1|B2|G|437
9Y49|1|B2|G|438
9Y49|1|B2|A|439
*
9Y49|1|B2|U|454
9Y49|1|B2|A|455
9Y49|1|B2|C|456

Current chains

Chain B2

18S rRNA (1786-MER)

Nearby chains

Chain AG

40S ribosomal protein S6

Chain AI

40S ribosomal protein S8