IL_9Y49_207

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UC*GGA

Length

5 nucleotides

Bulged bases

9Y49|1|B2|G|507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y49_207 not in the Motif Atlas

Homologous match to IL_9H3G_180

Geometric discrepancy: 0.1281

The information below is about IL_9H3G_180

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

77

Unit IDs

9Y49|1|B2|U|495
9Y49|1|B2|C|496
*
9Y49|1|B2|G|506
9Y49|1|B2|G|507
9Y49|1|B2|A|508

Current chains

Chain B2

18S rRNA (1786-MER)

Nearby chains

Chain AE

40S ribosomal protein S4, X isoform

Chain AY

40S ribosomal protein S24