IL_9Y49_226

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y49_226 not in the Motif Atlas

Geometric match to IL_3D0U_004

Geometric discrepancy: 0.2481

The information below is about IL_3D0U_004

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_74641.4

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

36

Unit IDs

9Y49|1|B2|A|922
9Y49|1|B2|G|923
*
9Y49|1|B2|C|1019
9Y49|1|B2|A|1020
9Y49|1|B2|U|1021
9Y49|1|B2|U|1022

Current chains

Chain B2

18S rRNA (1786-MER)

Nearby chains

Chain AL

40S ribosomal protein S11

Chain AN

40S ribosomal protein S13

Chain AW

40S ribosomal protein S15a

Chain Ab

40S ribosomal protein S27