IL_9Y49_237

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

9Y49|1|B2|C|1109

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y49_237 not in the Motif Atlas

Homologous match to IL_9PN5_193

Geometric discrepancy: 0.4999

The information below is about IL_9PN5_193

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

173

Unit IDs

9Y49|1|B2|G|1108
9Y49|1|B2|C|1109
9Y49|1|B2|G|1110
*
9Y49|1|B2|C|1123
9Y49|1|B2|C|1124

Current chains

Chain B2

18S rRNA (1786-MER)

Nearby chains

Chain AA

40S ribosomal protein SA

Chain AB

40S ribosomal protein S3a

Chain AR

40S ribosomal protein S17

Chain Ab

40S ribosomal protein S27