IL_9Y49_239

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

9Y49|1|B2|A|1695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y49_239 not in the Motif Atlas

Homologous match to IL_9PN5_195

Geometric discrepancy: 0.1121

The information below is about IL_9PN5_195

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

9Y49|1|B2|G|1203
9Y49|1|B2|A|1204
*
9Y49|1|B2|U|1694
9Y49|1|B2|A|1695
9Y49|1|B2|C|1696

Current chains

Chain B2

18S rRNA (1786-MER)

Nearby chains

Chain AC

40S ribosomal protein S2

Chain Aa

40S ribosomal protein S26

Chain Cn

60S ribosomal protein L41