IL_9Y49_270

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCAC*GAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y49_270 not in the Motif Atlas

Geometric match to IL_8B0X_103

Geometric discrepancy: 0.179

The information below is about IL_8B0X_103

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

9Y49|1|B2|C|1713
9Y49|1|B2|C|1714
9Y49|1|B2|A|1715
9Y49|1|B2|C|1716
*
9Y49|1|B2|G|1817
9Y49|1|B2|A|1818
9Y49|1|B2|A|1819
9Y49|1|B2|G|1820

Current chains

Chain B2

18S rRNA (1786-MER)

Nearby chains

Chain A6

Large subunit ribosomal RNA; LSU rRNA

Chain AX

40S ribosomal protein S23

Chain Cn

60S ribosomal protein L41