IL_9Y49_272

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUG*UA

Length

5 nucleotides

Bulged bases

9Y49|1|B2|U|1721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y49_272 not in the Motif Atlas

Homologous match to IL_9PN5_226

Geometric discrepancy: 0.57

The information below is about IL_9PN5_226

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

173

Unit IDs

9Y49|1|B2|U|1720
9Y49|1|B2|U|1721
9Y49|1|B2|G|1722
*
9Y49|1|B2|U|1812
9Y49|1|B2|A|1813

Current chains

Chain B2

18S rRNA (1786-MER)

Nearby chains

Chain A6

Large subunit ribosomal RNA; LSU rRNA

Chain AX

40S ribosomal protein S23

Chain CV

60S ribosomal protein L23

Chain Cn

60S ribosomal protein L41