IL_9Y49_273

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUA*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y49_273 not in the Motif Atlas

Homologous match to IL_9PN5_227

Geometric discrepancy: 0.2507

The information below is about IL_9PN5_227

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55553.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

6

Unit IDs

9Y49|1|B2|U|1729
9Y49|1|B2|U|1730
9Y49|1|B2|A|1731
*
9Y49|1|B2|U|1803
9Y49|1|B2|U|1804
9Y49|1|B2|G|1805

Current chains

Chain B2

18S rRNA (1786-MER)

Nearby chains

Chain A6

Large subunit ribosomal RNA; LSU rRNA

Chain AI

40S ribosomal protein S8

Chain CV

60S ribosomal protein L23