IL_9YDC_074

3D structure

PDB id

9YDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

9YDC|1|A|U|1931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YDC|1|A|C|1918
9YDC|1|A|G|1919
9YDC|1|A|U|1920
9YDC|1|A|A|1921
9YDC|1|A|A|1922
9YDC|1|A|C|1923
*
9YDC|1|A|G|1928
9YDC|1|A|G|1929
9YDC|1|A|A|1930
9YDC|1|A|U|1931
9YDC|1|A|A|1932
9YDC|1|A|A|1933
9YDC|1|A|G|1934

Current chains

Chain A

25S RNA

Nearby chains

Chain E

Small subunit ribosomal RNA; SSU rRNA

Chain Lr

60S ribosomal protein L43-A