IL_9YDC_100

3D structure

PDB id

9YDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

UCAAG*CGACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YDC|1|A|U|2835
9YDC|1|A|C|2836
9YDC|1|A|A|2837
9YDC|1|A|A|2838
9YDC|1|A|G|2839
*
9YDC|1|A|C|2849
9YDC|1|A|G|2850
9YDC|1|A|A|2851
9YDC|1|A|C|2852
9YDC|1|A|A|2853

Current chains

Chain A

25S RNA

Nearby chains

Chain LL

Large ribosomal subunit protein uL16

Chain Lo

Ubiquitin-60S ribosomal protein L40