IL_9YDC_198

3D structure

PDB id

9YDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

AUUG*CUUGAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YDC|1|E|A|1230
9YDC|1|E|U|1231
9YDC|1|E|U|1232
9YDC|1|E|G|1233
*
9YDC|1|E|C|1252
9YDC|1|E|U|1253
9YDC|1|E|U|1254
9YDC|1|E|G|1255
9YDC|1|E|A|1256
9YDC|1|E|U|1257

Current chains

Chain E

18S rRNA

Nearby chains

Chain SC

40S ribosomal protein S10-A

Chain SD

40S ribosomal protein S12

Chain SM

40S ribosomal protein S29-A

Chain SN

Ubiquitin-40S ribosomal protein S31