IL_9YDD_009

3D structure

PDB id

9YDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UU*AGUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YDD_009 not in the Motif Atlas

Homologous match to IL_8GLP_012

Geometric discrepancy: 0.512

The information below is about IL_8GLP_012

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.11

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

9YDD|1|A|U|177
9YDD|1|A|U|178
*
9YDD|1|A|A|238
9YDD|1|A|G|239
9YDD|1|A|U|240
9YDD|1|A|G|241

Current chains

Chain A

25S RNA

Nearby chains

Chain LN

60S ribosomal protein L13-A

Chain Lj

60S ribosomal protein L35-A

Chain Ll

60S ribosomal protein L37-A