IL_9YDD_013
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GUGAAAU*ACGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_013 not in the Motif Atlas
- Homologous match to IL_8GLP_021
- Geometric discrepancy: 0.0612
- The information below is about IL_8GLP_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22311.4
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 12
Unit IDs
9YDD|1|A|G|404
9YDD|1|A|U|405
9YDD|1|A|G|406
9YDD|1|A|A|407
9YDD|1|A|A|408
9YDD|1|A|A|409
9YDD|1|A|U|410
*
9YDD|1|C|A|13
9YDD|1|C|C|14
9YDD|1|C|G|15
9YDD|1|C|G|16
9YDD|1|C|A|17
9YDD|1|C|U|18
9YDD|1|C|C|19
Current chains
- Chain A
- 25S RNA
- Chain C
- 8S RNA
Nearby chains
- Chain LF
- 60S ribosomal protein L4-A
- Chain LR
- 60S ribosomal protein L17-A
- Chain Lg
- 60S ribosomal protein L32
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