IL_9YDD_020
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GGGG*UGCAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_020 not in the Motif Atlas
- Homologous match to IL_9PN5_022
- Geometric discrepancy: 0.0638
- The information below is about IL_9PN5_022
- Detailed Annotation
- UAA/GAN variation
- Broad Annotation
- No text annotation
- Motif group
- IL_45790.4
- Basepair signature
- cWW-tSH-L-tHS-cWW
- Number of instances in this motif group
- 12
Unit IDs
9YDD|1|A|G|725
9YDD|1|A|G|726
9YDD|1|A|G|727
9YDD|1|A|G|728
*
9YDD|1|A|U|741
9YDD|1|A|G|742
9YDD|1|A|C|743
9YDD|1|A|A|744
9YDD|1|A|C|745
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LS
- 60S ribosomal protein L18-A
- Chain Ld
- 60S ribosomal protein L29
Coloring options: