IL_9YDD_048
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 9YDD|1|A|C|1196, 9YDD|1|A|A|1302, 9YDD|1|A|U|1305, 9YDD|1|A|G|1306
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_048 not in the Motif Atlas
- Homologous match to IL_9PN5_050
- Geometric discrepancy: 0.0585
- The information below is about IL_9PN5_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_34501.4
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
9YDD|1|A|G|1194
9YDD|1|A|A|1195
9YDD|1|A|C|1196
9YDD|1|A|A|1197
9YDD|1|A|C|1198
9YDD|1|A|C|1199
9YDD|1|A|A|1200
9YDD|1|A|C|1201
9YDD|1|A|A|1202
9YDD|1|A|A|1203
9YDD|1|A|A|1204
9YDD|1|A|A|1205
*
9YDD|1|A|U|1299
9YDD|1|A|G|1300
9YDD|1|A|A|1301
9YDD|1|A|A|1302
9YDD|1|A|A|1303
9YDD|1|A|A|1304
9YDD|1|A|U|1305
9YDD|1|A|G|1306
9YDD|1|A|G|1307
9YDD|1|A|A|1308
9YDD|1|A|U|1309
9YDD|1|A|G|1310
9YDD|1|A|G|1311
9YDD|1|A|C|1312
9YDD|1|A|G|1313
9YDD|1|A|C|1314
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain LE
- 60S ribosomal protein L3
- Chain LI
- 60S ribosomal protein L7-A
- Chain LL
- Large ribosomal subunit protein uL16
- Chain LQ
- 60S ribosomal protein L16-A
- Chain Lh
- 60S ribosomal protein L33-A
- Chain Lo
- Ubiquitin-60S ribosomal protein L40
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