IL_9YDD_049

3D structure

PDB id

9YDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

9YDD|1|A|U|1208

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YDD_049 not in the Motif Atlas

Homologous match to IL_9H3G_059

Geometric discrepancy: 0.1216

The information below is about IL_9H3G_059

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.9

Basepair signature

cWW-L-cWW

Number of instances in this motif group

193

Unit IDs

9YDD|1|A|G|1207
9YDD|1|A|U|1208
9YDD|1|A|G|1209
*
9YDD|1|A|C|1296
9YDD|1|A|C|1297

Current chains

Chain A

25S RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain LK

60S ribosomal protein L9-A

Chain LU

60S ribosomal protein L20-A

Chain Lo

Ubiquitin-60S ribosomal protein L40