IL_9YDD_051
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CGU*AGUG
- Length
- 7 nucleotides
- Bulged bases
- 9YDD|1|A|G|1429
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_051 not in the Motif Atlas
- Homologous match to IL_9PN5_056
- Geometric discrepancy: 0.0497
- The information below is about IL_9PN5_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84227.2
- Basepair signature
- cWW-cWS-cWW
- Number of instances in this motif group
- 20
Unit IDs
9YDD|1|A|C|1376
9YDD|1|A|G|1377
9YDD|1|A|U|1378
*
9YDD|1|A|A|1428
9YDD|1|A|G|1429
9YDD|1|A|U|1430
9YDD|1|A|G|1431
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LF
- 60S ribosomal protein L4-A
- Chain Lc
- 60S ribosomal protein L28
- Chain Lg
- 60S ribosomal protein L32
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