IL_9YDD_053
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- UGACGAAG*UCGAA
- Length
- 13 nucleotides
- Bulged bases
- 9YDD|1|A|C|1391
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_053 not in the Motif Atlas
- Homologous match to IL_9PN5_058
- Geometric discrepancy: 0.0513
- The information below is about IL_9PN5_058
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90775.4
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 31
Unit IDs
9YDD|1|A|U|1388
9YDD|1|A|G|1389
9YDD|1|A|A|1390
9YDD|1|A|C|1391
9YDD|1|A|G|1392
9YDD|1|A|A|1393
9YDD|1|A|A|1394
9YDD|1|A|G|1395
*
9YDD|1|A|U|1415
9YDD|1|A|C|1416
9YDD|1|A|G|1417
9YDD|1|A|A|1418
9YDD|1|A|A|1419
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LF
- 60S ribosomal protein L4-A
- Chain LH
- Large ribosomal subunit protein eL6B
- Chain LR
- 60S ribosomal protein L17-A
- Chain La
- 60S ribosomal protein L26-A
- Chain Lg
- 60S ribosomal protein L32
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