IL_9YDD_055
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GUAGUAG*CGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_055 not in the Motif Atlas
- Homologous match to IL_9SUM_055
- Geometric discrepancy: 0.0404
- The information below is about IL_9SUM_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_02666.4
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
9YDD|1|A|G|1444
9YDD|1|A|U|1445
9YDD|1|A|A|1446
9YDD|1|A|G|1447
9YDD|1|A|U|1448
9YDD|1|A|A|1449
9YDD|1|A|G|1450
*
9YDD|1|A|C|2354
9YDD|1|A|G|2355
9YDD|1|A|A|2356
9YDD|1|A|A|2357
9YDD|1|A|A|2358
9YDD|1|A|C|2359
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LF
- 60S ribosomal protein L4-A
- Chain LR
- 60S ribosomal protein L17-A
Coloring options: