IL_9YDD_062
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- UGAAU*AGGAA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_062 not in the Motif Atlas
- Homologous match to IL_9PN5_066
- Geometric discrepancy: 0.0959
- The information below is about IL_9PN5_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15190.5
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 29
Unit IDs
9YDD|1|A|U|1645
9YDD|1|A|G|1646
9YDD|1|A|A|1647
9YDD|1|A|A|1648
9YDD|1|A|U|1649
*
9YDD|1|A|A|1806
9YDD|1|A|G|1807
9YDD|1|A|G|1808
9YDD|1|A|A|1809
9YDD|1|A|A|1810
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LD
- 60S ribosomal protein L2-A
- Chain Lb
- 60S ribosomal protein L27-A
- Chain Li
- 60S ribosomal protein L34-A
Coloring options: