IL_9YDD_073
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- AGUCGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 9YDD|1|A|G|2335
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_073 not in the Motif Atlas
- Homologous match to IL_8GLP_107
- Geometric discrepancy: 0.0778
- The information below is about IL_8GLP_107
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28217.4
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 12
Unit IDs
9YDD|1|A|A|1901
9YDD|1|A|G|1902
9YDD|1|A|U|1903
9YDD|1|A|C|1904
9YDD|1|A|G|1905
9YDD|1|A|G|1906
*
9YDD|1|A|C|2333
9YDD|1|A|U|2334
9YDD|1|A|G|2335
9YDD|1|A|U|2336
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LE
- 60S ribosomal protein L3
- Chain LX
- 60S ribosomal protein L23-A
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