IL_9YDD_077

3D structure

PDB id

9YDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CU*GAG

Length

5 nucleotides

Bulged bases

9YDD|1|A|A|2324

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YDD_077 not in the Motif Atlas

Homologous match to IL_9PN5_080

Geometric discrepancy: 0.05

The information below is about IL_9PN5_080

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

9YDD|1|A|C|2128
9YDD|1|A|U|2129
*
9YDD|1|A|G|2323
9YDD|1|A|A|2324
9YDD|1|A|G|2325

Current chains

Chain A

25S RNA

Nearby chains