IL_9YDD_083

3D structure

PDB id

9YDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YDD_083 not in the Motif Atlas

Geometric match to IL_9PN5_086

Geometric discrepancy: 0.0489

The information below is about IL_9PN5_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24886.5

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

14

Unit IDs

9YDD|1|A|G|2276
9YDD|1|A|C|2277
*
9YDD|1|A|G|2307
9YDD|1|A|C|2308
9YDD|1|A|A|2309
9YDD|1|A|U|2310

Current chains

Chain A

25S RNA

Nearby chains

Chain Lp

60S ribosomal protein L41-A