IL_9YDD_085

3D structure

PDB id

9YDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GCGG*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YDD_085 not in the Motif Atlas

Homologous match to IL_9PN5_088

Geometric discrepancy: 0.068

The information below is about IL_9PN5_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.5

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

13

Unit IDs

9YDD|1|A|G|2391
9YDD|1|A|C|2392
9YDD|1|A|G|2393
9YDD|1|A|G|2394
*
9YDD|1|A|U|2986
9YDD|1|A|A|2987
9YDD|1|A|C|2988

Current chains

Chain A

25S RNA

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LQ

60S ribosomal protein L16-A

Chain LR

60S ribosomal protein L17-A