IL_9YDD_086

3D structure

PDB id

9YDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

9YDD|1|A|A|2397, 9YDD|1|A|C|2983

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YDD_086 not in the Motif Atlas

Homologous match to IL_9SUM_085

Geometric discrepancy: 0.074

The information below is about IL_9SUM_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80025.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

10

Unit IDs

9YDD|1|A|G|2396
9YDD|1|A|A|2397
9YDD|1|A|A|2398
*
9YDD|1|A|U|2981
9YDD|1|A|A|2982
9YDD|1|A|C|2983
9YDD|1|A|C|2984

Current chains

Chain A

25S RNA

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LR

60S ribosomal protein L17-A