IL_9YDD_089

3D structure

PDB id

9YDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

9YDD|1|A|G|2606

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YDD_089 not in the Motif Atlas

Homologous match to IL_9SUM_088

Geometric discrepancy: 0.068

The information below is about IL_9SUM_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87316.5

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

9YDD|1|A|U|2423
9YDD|1|A|A|2424
9YDD|1|A|G|2425
*
9YDD|1|A|U|2604
9YDD|1|A|G|2605
9YDD|1|A|G|2606
9YDD|1|A|G|2607

Current chains

Chain A

25S RNA

Nearby chains

Chain LD

60S ribosomal protein L2-A

Chain LP

60S ribosomal protein L15-A

Chain Lq

60S ribosomal protein L42-A