IL_9YDD_090
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- AUGAAGC*GGGU
- Length
- 11 nucleotides
- Bulged bases
- 9YDD|1|A|G|2522, 9YDD|1|A|G|2585, 9YDD|1|A|G|2586
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_090 not in the Motif Atlas
- Homologous match to IL_8GLP_135
- Geometric discrepancy: 0.1021
- The information below is about IL_8GLP_135
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_52092.4
- Basepair signature
- cWW-cWS-cWW
- Number of instances in this motif group
- 6
Unit IDs
9YDD|1|A|A|2520
9YDD|1|A|U|2521
9YDD|1|A|G|2522
9YDD|1|A|A|2523
9YDD|1|A|A|2524
9YDD|1|A|G|2525
9YDD|1|A|C|2526
*
9YDD|1|A|G|2584
9YDD|1|A|G|2585
9YDD|1|A|G|2586
9YDD|1|A|U|2587
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LD
- 60S ribosomal protein L2-A
- Chain LJ
- 60S ribosomal protein L8-A
- Chain LZ
- 60S ribosomal protein L25
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