IL_9YDD_093
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- UUGA*UACA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_093 not in the Motif Atlas
- Homologous match to IL_9SUM_094
- Geometric discrepancy: 0.082
- The information below is about IL_9SUM_094
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.5
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 42
Unit IDs
9YDD|1|A|U|2718
9YDD|1|A|U|2719
9YDD|1|A|G|2720
9YDD|1|A|A|2721
*
9YDD|1|A|U|2735
9YDD|1|A|A|2736
9YDD|1|A|C|2737
9YDD|1|A|A|2738
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LG
- 60S ribosomal protein L5
- Chain LS
- 60S ribosomal protein L18-A
- Chain LV
- 60S ribosomal protein L21-A
- Chain Ld
- 60S ribosomal protein L29
- Chain Lq
- 60S ribosomal protein L42-A
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