IL_9YDD_098
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- UCAAG*CGACA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_098 not in the Motif Atlas
- Homologous match to IL_9SUM_099
- Geometric discrepancy: 0.0811
- The information below is about IL_9SUM_099
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_87767.5
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
9YDD|1|A|U|2835
9YDD|1|A|C|2836
9YDD|1|A|A|2837
9YDD|1|A|A|2838
9YDD|1|A|G|2839
*
9YDD|1|A|C|2849
9YDD|1|A|G|2850
9YDD|1|A|A|2851
9YDD|1|A|C|2852
9YDD|1|A|A|2853
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LL
- Large ribosomal subunit protein uL16
- Chain Lo
- Ubiquitin-60S ribosomal protein L40
- Chain m
- Transfer RNA; tRNA
Coloring options: