IL_9YDD_104

3D structure

PDB id

9YDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UA*UAAG

Length

6 nucleotides

Bulged bases

9YDD|1|A|A|2911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YDD_104 not in the Motif Atlas

Homologous match to IL_9PN5_107

Geometric discrepancy: 0.066

The information below is about IL_9PN5_107

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_94991.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

9YDD|1|A|U|2891
9YDD|1|A|A|2892
*
9YDD|1|A|U|2909
9YDD|1|A|A|2910
9YDD|1|A|A|2911
9YDD|1|A|G|2912

Current chains

Chain A

25S RNA

Nearby chains

Chain LK

60S ribosomal protein L9-A

Chain LQ

60S ribosomal protein L16-A

Chain Lo

Ubiquitin-60S ribosomal protein L40