IL_9YDD_123

3D structure

PDB id

9YDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

9YDD|1|A|U|3319

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YDD_123 not in the Motif Atlas

Homologous match to IL_9PN5_126

Geometric discrepancy: 0.215

The information below is about IL_9PN5_126

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.9

Basepair signature

cWW-L-cWW

Number of instances in this motif group

193

Unit IDs

9YDD|1|A|G|3318
9YDD|1|A|U|3319
9YDD|1|A|A|3320
*
9YDD|1|A|U|3387
9YDD|1|A|C|3388

Current chains

Chain A

25S RNA

Nearby chains

Chain LE

60S ribosomal protein L3

Chain Lf

60S ribosomal protein L31-A