IL_9YDD_128
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- AGAG*CGAU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_128 not in the Motif Atlas
- Homologous match to IL_9SUM_126
- Geometric discrepancy: 0.1746
- The information below is about IL_9SUM_126
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_58355.5
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 50
Unit IDs
9YDD|1|A|A|3342
9YDD|1|A|G|3343
9YDD|1|A|A|3344
9YDD|1|A|G|3345
*
9YDD|1|A|C|3360
9YDD|1|A|G|3361
9YDD|1|A|A|3362
9YDD|1|A|U|3363
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LT
- 60S ribosomal protein L19-A
- Chain LW
- 60S ribosomal protein L22-A
- Chain LY
- 60S ribosomal protein L24-A
- Chain SV
- 40S ribosomal protein S8-A
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