IL_9YDD_129

3D structure

PDB id

9YDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CU*AAG

Length

5 nucleotides

Bulged bases

9YDD|1|B|A|64

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YDD_129 not in the Motif Atlas

Homologous match to IL_9PN5_133

Geometric discrepancy: 0.0815

The information below is about IL_9PN5_133

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

9YDD|1|B|C|15
9YDD|1|B|U|16
*
9YDD|1|B|A|63
9YDD|1|B|A|64
9YDD|1|B|G|65

Current chains

Chain B

5S RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain LG

60S ribosomal protein L5

Chain LL

Large ribosomal subunit protein uL16

Chain LM

Large ribosomal subunit protein uL5B