IL_9YDD_144
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- UAUAAG*UGAAA
- Length
- 11 nucleotides
- Bulged bases
- 9YDD|1|E|U|66, 9YDD|1|E|A|68
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_144 not in the Motif Atlas
- Homologous match to IL_9PN5_148
- Geometric discrepancy: 0.1138
- The information below is about IL_9PN5_148
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_21667.4
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
9YDD|1|E|U|64
9YDD|1|E|A|65
9YDD|1|E|U|66
9YDD|1|E|A|67
9YDD|1|E|A|68
9YDD|1|E|G|69
*
9YDD|1|E|U|82
9YDD|1|E|G|83
9YDD|1|E|A|84
9YDD|1|E|A|85
9YDD|1|E|A|86
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain ST
- 40S ribosomal protein S6-A
- Chain Sd
- 40S ribosomal protein S24-A
Coloring options: