IL_9YDD_152

3D structure

PDB id

9YDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

AAU*AU

Length

5 nucleotides

Bulged bases

9YDD|1|E|A|266

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YDD_152 not in the Motif Atlas

Homologous match to IL_9H3G_171

Geometric discrepancy: 0.088

The information below is about IL_9H3G_171

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

9YDD|1|E|A|265
9YDD|1|E|A|266
9YDD|1|E|U|267
*
9YDD|1|E|A|288
9YDD|1|E|U|289

Current chains

Chain E

18S rRNA

Nearby chains

Chain SS

40S ribosomal protein S4-A

Chain ST

40S ribosomal protein S6-A