IL_9YDD_163

3D structure

PDB id

9YDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GAG*CGAGGAAC

Length

11 nucleotides

Bulged bases

9YDD|1|E|G|539, 9YDD|1|E|G|540, 9YDD|1|E|A|541, 9YDD|1|E|A|542

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YDD|1|E|G|514
9YDD|1|E|A|515
9YDD|1|E|G|516
*
9YDD|1|E|C|536
9YDD|1|E|G|537
9YDD|1|E|A|538
9YDD|1|E|G|539
9YDD|1|E|G|540
9YDD|1|E|A|541
9YDD|1|E|A|542
9YDD|1|E|C|543

Current chains

Chain E

18S rRNA

Nearby chains

Chain SW

40S ribosomal protein S9-A

Chain Sg

40S ribosomal protein S30-A