IL_9YDD_169
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GUUAAAA*UC
- Length
- 9 nucleotides
- Bulged bases
- 9YDD|1|E|A|619
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_169 not in the Motif Atlas
- Homologous match to IL_9SUM_168
- Geometric discrepancy: 0.0836
- The information below is about IL_9SUM_168
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_20847.4
- Basepair signature
- cWW-L-cWW-L-L-R
- Number of instances in this motif group
- 7
Unit IDs
9YDD|1|E|G|616
9YDD|1|E|U|617
9YDD|1|E|U|618
9YDD|1|E|A|619
9YDD|1|E|A|620
9YDD|1|E|A|621
9YDD|1|E|A|622
*
9YDD|1|E|U|1104
9YDD|1|E|C|1105
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain Sc
- 40S ribosomal protein S23-A
- Chain Se
- Small ribosomal subunit protein eS26B
Coloring options: