IL_9YDD_175
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GAAAAAAUU*AUAUUAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_175 not in the Motif Atlas
- Homologous match to IL_9H3G_194
- Geometric discrepancy: 0.1592
- The information below is about IL_9H3G_194
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_59049.5
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
9YDD|1|E|G|751
9YDD|1|E|A|752
9YDD|1|E|A|753
9YDD|1|E|A|754
9YDD|1|E|A|755
9YDD|1|E|A|756
9YDD|1|E|A|757
9YDD|1|E|U|758
9YDD|1|E|U|759
*
9YDD|1|E|A|791
9YDD|1|E|U|792
9YDD|1|E|A|793
9YDD|1|E|U|794
9YDD|1|E|U|795
9YDD|1|E|A|796
9YDD|1|E|G|797
9YDD|1|E|C|798
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain SS
- 40S ribosomal protein S4-A
- Chain SW
- 40S ribosomal protein S9-A
- Chain SX
- 40S ribosomal protein S11-A
- Chain Sb
- 40S ribosomal protein S22-A
Coloring options: