IL_9YDD_176

3D structure

PDB id

9YDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

ACGUUUGG*CCAUCGU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YDD|1|E|A|817
9YDD|1|E|C|818
9YDD|1|E|G|819
9YDD|1|E|U|820
9YDD|1|E|U|821
9YDD|1|E|U|822
9YDD|1|E|G|823
9YDD|1|E|G|824
*
9YDD|1|E|C|848
9YDD|1|E|C|849
9YDD|1|E|A|850
9YDD|1|E|U|851
9YDD|1|E|C|852
9YDD|1|E|G|853
9YDD|1|E|U|854

Current chains

Chain E

18S rRNA

Nearby chains

Chain LT

60S ribosomal protein L19-A

Chain SU

40S ribosomal protein S7-A