IL_9YDD_177
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- AG*CAUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_177 not in the Motif Atlas
- Geometric match to IL_8GLP_235
- Geometric discrepancy: 0.0846
- The information below is about IL_8GLP_235
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_74641.5
- Basepair signature
- cWW-tSH-cWW-L
- Number of instances in this motif group
- 37
Unit IDs
9YDD|1|E|A|865
9YDD|1|E|G|866
*
9YDD|1|E|C|962
9YDD|1|E|A|963
9YDD|1|E|U|964
9YDD|1|E|U|965
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain SY
- 40S ribosomal protein S13
- Chain Sb
- 40S ribosomal protein S22-A
- Chain Sf
- 40S ribosomal protein S27-A
Coloring options: