IL_9YDD_180
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CGGGG*CAAG
- Length
- 9 nucleotides
- Bulged bases
- 9YDD|1|E|G|876
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YDD_180 not in the Motif Atlas
- Homologous match to IL_9PN5_185
- Geometric discrepancy: 0.0537
- The information below is about IL_9PN5_185
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.5
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 42
Unit IDs
9YDD|1|E|C|874
9YDD|1|E|G|875
9YDD|1|E|G|876
9YDD|1|E|G|877
9YDD|1|E|G|878
*
9YDD|1|E|C|950
9YDD|1|E|A|951
9YDD|1|E|A|952
9YDD|1|E|G|953
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain Le
- 60S ribosomal protein L30
- Chain SQ
- Small ribosomal subunit protein eS1A
- Chain SY
- 40S ribosomal protein S13
- Chain Se
- Small ribosomal subunit protein eS26B
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